HL_4XEJ_069

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4XEJ|1|A23S|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_069 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3679

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4XEJ|1|A23S|C|1450
4XEJ|1|A23S|C|1452
4XEJ|1|A23S|A|1453
4XEJ|1|A23S|U|1454
4XEJ|1|A23S|G|1455
4XEJ|1|A23S|G|1456
4XEJ|1|A23S|A|1457
4XEJ|1|A23S|C|1458
4XEJ|1|A23S|G|1459
4XEJ|1|A23S|A|1460
4XEJ|1|A23S|G|1461

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL17

50S ribosomal protein L17