HL_4XEJ_204

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4XEJ|1|B23S|G|2751, 4XEJ|1|B23S|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_204 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1417

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4XEJ|1|B23S|C|2745
4XEJ|1|B23S|U|2746
4XEJ|1|B23S|G|2747
4XEJ|1|B23S|A|2748
4XEJ|1|B23S|A|2749
4XEJ|1|B23S|A|2750
4XEJ|1|B23S|G|2751
4XEJ|1|B23S|C|2752
4XEJ|1|B23S|A|2753
4XEJ|1|B23S|U|2754
4XEJ|1|B23S|C|2755
4XEJ|1|B23S|U|2756
4XEJ|1|B23S|A|2757
4XEJ|1|B23S|A|2758
4XEJ|1|B23S|G|2759

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL06

50S ribosomal protein L6

Chain BL13

50S ribosomal protein L13