HL_4Y4O_091
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 4Y4O|1|1a|A|968, 4Y4O|1|1a|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4Y4O_091 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0821
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4Y4O|1|1a|G|963
4Y4O|1|1a|A|964
4Y4O|1|1a|A|965
4Y4O|1|1a|M2G|966
4Y4O|1|1a|5MC|967
4Y4O|1|1a|A|968
4Y4O|1|1a|A|969
4Y4O|1|1a|C|970
4Y4O|1|1a|G|971
4Y4O|1|1a|C|972
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1m
- 30S ribosomal protein S13
- Chain 1y
- Ribosome-associated inhibitor A
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