HL_4Y4O_180
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 4Y4O|1|2a|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4Y4O_180 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.0628
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4Y4O|1|2a|G|259
4Y4O|1|2a|G|260
4Y4O|1|2a|U|261
4Y4O|1|2a|A|262
4Y4O|1|2a|A|263
4Y4O|1|2a|U|264
4Y4O|1|2a|G|265
4Y4O|1|2a|G|266
4Y4O|1|2a|C|267
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2q
- 30S ribosomal protein S17
- Chain 2t
- 30S ribosomal protein S20
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