HL_5A8L_001

3D structure

PDB id

5A8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human eRF1 and the hCMV nascent peptide in the translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

5A8L|1|A|U|1578, 5A8L|1|A|A|1582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5A8L_001 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.4127

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5A8L|1|A|A|1575
5A8L|1|A|C|1576
5A8L|1|A|G|1577
5A8L|1|A|U|1578
5A8L|1|A|G|1579
5A8L|1|A|C|1580
5A8L|1|A|A|1581
5A8L|1|A|A|1582
5A8L|1|A|A|1583
5A8L|1|A|U|1584

Current chains

Chain A

28S RIBOSOMAL RNA

Nearby chains

Chain D

60S RIBOSOMAL PROTEIN L17

Chain Z

NASCENT CHAIN