HL_5A8L_004
3D structure
- PDB id
- 5A8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human eRF1 and the hCMV nascent peptide in the translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 5A8L|1|A|A|3732
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5A8L_004 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.4389
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5A8L|1|A|G|3729
5A8L|1|A|U|3730
5A8L|1|A|A|3731
5A8L|1|A|A|3732
5A8L|1|A|C|3733
5A8L|1|A|U|3734
5A8L|1|A|A|3735
5A8L|1|A|U|3736
5A8L|1|A|G|3737
5A8L|1|A|A|3738
5A8L|1|A|C|3739
Current chains
- Chain A
- 28S RIBOSOMAL RNA
Nearby chains
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain Q
- EUKARYOTIC RELEASE FACTOR ERF1
- Chain R
- MRNA
Coloring options: