HL_5AJ0_086

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

5AJ0|1|B1|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_086 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2415

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5AJ0|1|B1|G|288
5AJ0|1|B1|G|289
5AJ0|1|B1|U|290
5AJ0|1|B1|G|291
5AJ0|1|B1|A|292
5AJ0|1|B1|C|293
5AJ0|1|B1|U|294
5AJ0|1|B1|C|295

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BG

40S ribosomal protein S6

Chain BL

40S ribosomal protein S11