HL_5AJ0_100

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_100 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4335

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5AJ0|1|B1|U|885
5AJ0|1|B1|A|886
5AJ0|1|B1|U|887
5AJ0|1|B1|U|888
5AJ0|1|B1|U|889
5AJ0|1|B1|U|890
5AJ0|1|B1|G|891
5AJ0|1|B1|U|892
5AJ0|1|B1|U|893
5AJ0|1|B1|G|894
5AJ0|1|B1|G|895
5AJ0|1|B1|U|896
5AJ0|1|B1|U|897
5AJ0|1|B1|U|898
5AJ0|1|B1|U|899
5AJ0|1|B1|C|900
5AJ0|1|B1|G|901

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain BL

40S ribosomal protein S11