HL_5AJ0_108

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

5AJ0|1|B1|U|1300, 5AJ0|1|B1|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_108 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1476

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5AJ0|1|B1|A|1295
5AJ0|1|B1|U|1296
5AJ0|1|B1|U|1297
5AJ0|1|B1|G|1298
5AJ0|1|B1|A|1299
5AJ0|1|B1|U|1300
5AJ0|1|B1|A|1301
5AJ0|1|B1|G|1302
5AJ0|1|B1|C|1303
5AJ0|1|B1|U|1304

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain Bd

40S ribosomal protein S29

Chain Bf

Ubiquitin-40S ribosomal protein S27a