HL_5AJ0_110

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

5AJ0|1|B1|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_110 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1428

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5AJ0|1|B1|G|1366
5AJ0|1|B1|U|1367
5AJ0|1|B1|U|1368
5AJ0|1|B1|A|1369
5AJ0|1|B1|A|1370
5AJ0|1|B1|U|1371
5AJ0|1|B1|U|1372
5AJ0|1|B1|C|1373

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BR

40S ribosomal protein S17-like