HL_5AKA_008

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_008 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.3221

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5AKA|1|B|U|158
5AKA|1|B|G|159
5AKA|1|B|A|160
5AKA|1|B|A|161
5AKA|1|B|U|162
5AKA|1|B|C|163
5AKA|1|B|C|164
5AKA|1|B|A|165
5AKA|1|B|U|166
5AKA|1|B|A|167
5AKA|1|B|G|168

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Z

50S RIBOSOMAL PROTEIN L31