HL_5AKA_015

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5AKA|1|B|G|386, 5AKA|1|B|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_015 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1134

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5AKA|1|B|A|382
5AKA|1|B|C|383
5AKA|1|B|A|384
5AKA|1|B|C|385
5AKA|1|B|G|386
5AKA|1|B|U|387
5AKA|1|B|G|388
5AKA|1|B|G|389
5AKA|1|B|U|390
5AKA|1|B|A|391
5AKA|1|B|U|392

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Z

50S RIBOSOMAL PROTEIN L31