HL_5AKA_048

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

5AKA|1|B|A|1780, 5AKA|1|B|U|1781, 5AKA|1|B|U|1782, 5AKA|1|B|A|1786

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_048 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0926

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5AKA|1|B|U|1777
5AKA|1|B|U|1778
5AKA|1|B|U|1779
5AKA|1|B|A|1780
5AKA|1|B|U|1781
5AKA|1|B|U|1782
5AKA|1|B|A|1783
5AKA|1|B|A|1784
5AKA|1|B|A|1785
5AKA|1|B|A|1786
5AKA|1|B|A|1787

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain C

50S RIBOSOMAL PROTEIN L2