HL_5DM6_006

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5DM6|1|X|A|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM6_006 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1163

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5DM6|1|X|G|166
5DM6|1|X|A|167
5DM6|1|X|A|168
5DM6|1|X|A|169
5DM6|1|X|C|170
5DM6|1|X|A|171
5DM6|1|X|U|172
5DM6|1|X|C|173

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28