HL_5FLX_006

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

5FLX|1|1|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FLX_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2033

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5FLX|1|1|G|288
5FLX|1|1|G|289
5FLX|1|1|U|290
5FLX|1|1|G|291
5FLX|1|1|A|292
5FLX|1|1|C|293
5FLX|1|1|U|294
5FLX|1|1|C|295

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain G

40S RIBOSOMAL PROTEIN S6

Chain L

40S RIBOSOMAL PROTEIN S11