HL_5FLX_020
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 5FLX|1|1|U|890
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FLX_020 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.4157
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5FLX|1|1|U|885
5FLX|1|1|A|886
5FLX|1|1|U|887
5FLX|1|1|U|888
5FLX|1|1|U|889
5FLX|1|1|U|890
5FLX|1|1|G|891
5FLX|1|1|U|892
5FLX|1|1|U|893
5FLX|1|1|G|894
5FLX|1|1|G|895
5FLX|1|1|U|896
5FLX|1|1|U|897
5FLX|1|1|U|898
5FLX|1|1|U|899
5FLX|1|1|C|900
5FLX|1|1|G|901
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain L
- 40S RIBOSOMAL PROTEIN S11
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