HL_5FLX_027
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 5FLX|1|1|A|1253
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FLX_027 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.1468
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5FLX|1|1|G|1245
5FLX|1|1|A|1246
5FLX|1|1|C|1247
5FLX|1|1|U|1248
5FLX|1|1|C|1249
5FLX|1|1|A|1250
5FLX|1|1|A|1251
5FLX|1|1|C|1252
5FLX|1|1|A|1253
5FLX|1|1|C|1254
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain S
- 40S RIBOSOMAL PROTEIN S18
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain d
- 40S RIBOSOMAL PROTEIN S29
- Chain f
- UBIQUITIN-40S RIBOSOMAL PROTEIN S27A
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