HL_5FLX_028

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

5FLX|1|1|U|1300, 5FLX|1|1|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FLX_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2121

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5FLX|1|1|A|1295
5FLX|1|1|U|1296
5FLX|1|1|U|1297
5FLX|1|1|G|1298
5FLX|1|1|A|1299
5FLX|1|1|U|1300
5FLX|1|1|A|1301
5FLX|1|1|G|1302
5FLX|1|1|C|1303
5FLX|1|1|U|1304

Current chains

Chain 1

18S RRNA

Nearby chains

Chain P

40S RIBOSOMAL PROTEIN S15

Chain d

40S RIBOSOMAL PROTEIN S29

Chain f

UBIQUITIN-40S RIBOSOMAL PROTEIN S27A