3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
GUGUAAAAC
Length
9 nucleotides
Bulged bases
5GAK|1|1|U|689, 5GAK|1|1|A|691
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5GAK_015 not in the Motif Atlas
Homologous match to HL_5TBW_015
Geometric discrepancy: 0.2305
The information below is about HL_5TBW_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53971.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5GAK|1|1|G|686
5GAK|1|1|U|687
5GAK|1|1|G|688
5GAK|1|1|U|689
5GAK|1|1|A|690
5GAK|1|1|A|691
5GAK|1|1|A|692
5GAK|1|1|A|693
5GAK|1|1|C|694

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain G
60S ribosomal protein L4-A
Chain N
60S ribosomal protein L13-A
Chain P
60S ribosomal protein L15-A
Chain a
60S ribosomal protein L26-A

Coloring options:


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