HL_5GAK_020
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 5GAK|1|1|U|879, 5GAK|1|1|A|883, 5GAK|1|1|A|884
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_020 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.2364
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5GAK|1|1|A|876
5GAK|1|1|C|877
5GAK|1|1|G|878
5GAK|1|1|U|879
5GAK|1|1|G|880
5GAK|1|1|C|881
5GAK|1|1|A|882
5GAK|1|1|A|883
5GAK|1|1|A|884
5GAK|1|1|U|885
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L3
- Chain R
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L37-A
- Chain z
- nascent polypeptide chain
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