3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
5GAK|1|1|U|1081
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5GAK_024 not in the Motif Atlas
Geometric match to HL_5TBW_024
Geometric discrepancy: 0.3108
The information below is about HL_5TBW_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

5GAK|1|1|C|1076
5GAK|1|1|U|1077
5GAK|1|1|U|1078
5GAK|1|1|A|1079
5GAK|1|1|A|1080
5GAK|1|1|U|1081
5GAK|1|1|U|1082
5GAK|1|1|G|1083

Current chains

Chain 1
25S rRNA

Nearby chains

Chain H
60S ribosomal protein L5
Chain V
60S ribosomal protein L21-A
Chain d
60S ribosomal protein L29

Coloring options:


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