HL_5GAK_024

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5GAK|1|1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3108

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5GAK|1|1|C|1076
5GAK|1|1|U|1077
5GAK|1|1|U|1078
5GAK|1|1|A|1079
5GAK|1|1|A|1080
5GAK|1|1|U|1081
5GAK|1|1|U|1082
5GAK|1|1|G|1083

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L5

Chain V

60S ribosomal protein L21-A

Chain d

60S ribosomal protein L29