HL_5GAK_027

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

5GAK|1|1|A|1240, 5GAK|1|1|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.4965

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5GAK|1|1|C|1239
5GAK|1|1|A|1240
5GAK|1|1|U|1241
5GAK|1|1|G|1242
5GAK|1|1|G|1243
5GAK|1|1|A|1244
5GAK|1|1|A|1245
5GAK|1|1|G|1246
5GAK|1|1|U|1247
5GAK|1|1|C|1248
5GAK|1|1|G|1249

Current chains

Chain 1

25S rRNA

Nearby chains