HL_5GAK_041
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 5GAK|1|1|C|1846, 5GAK|1|1|G|1848, 5GAK|1|1|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_041 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.2007
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5GAK|1|1|C|1844
5GAK|1|1|G|1845
5GAK|1|1|C|1846
5GAK|1|1|A|1847
5GAK|1|1|G|1848
5GAK|1|1|C|1849
5GAK|1|1|A|1850
5GAK|1|1|G|1851
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain R
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L37-A
- Chain n
- 60S ribosomal protein L39
- Chain z
- nascent polypeptide chain
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