HL_5GAK_049
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 5GAK|1|1|A|2256
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_049 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.3255
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5GAK|1|1|G|2253
5GAK|1|1|U|2254
5GAK|1|1|A|2255
5GAK|1|1|A|2256
5GAK|1|1|C|2257
5GAK|1|1|U|2258
5GAK|1|1|A|2259
5GAK|1|1|U|2260
5GAK|1|1|G|2261
5GAK|1|1|A|2262
5GAK|1|1|C|2263
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain B
- Transfer RNA; tRNA
Coloring options: