HL_5HCR_101
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 5HCR|1|1x|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HCR_101 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.081
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
5HCR|1|1x|G|31
5HCR|1|1x|5MC|32
5HCR|1|1x|U|33
5HCR|1|1x|C|34
5HCR|1|1x|A|35
5HCR|1|1x|U|36
5HCR|1|1x|A|37
5HCR|1|1x|A|38
5HCR|1|1x|C|39
Current chains
- Chain 1x
- P-site tRNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1i
- 30S ribosomal protein S9
- Chain 1v
- mRNA
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