HL_5HCR_126

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

5HCR|1|2A|U|793, 5HCR|1|2A|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCR_126 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0723

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

5HCR|1|2A|G|790
5HCR|1|2A|G|791
5HCR|1|2A|A|792
5HCR|1|2A|U|793
5HCR|1|2A|G|794
5HCR|1|2A|C|795
5HCR|1|2A|A|796
5HCR|1|2A|A|797
5HCR|1|2A|A|798
5HCR|1|2A|C|799

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 27

50S ribosomal protein L34

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22

Chain 2z

Oncocin 10wt