HL_5HCR_170

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5HCR|1|2A|G|2763, 5HCR|1|2A|C|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCR_170 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.102

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5HCR|1|2A|C|2757
5HCR|1|2A|U|2758
5HCR|1|2A|G|2759
5HCR|1|2A|A|2760
5HCR|1|2A|A|2761
5HCR|1|2A|A|2762
5HCR|1|2A|G|2763
5HCR|1|2A|C|2764
5HCR|1|2A|A|2765
5HCR|1|2A|U|2766
5HCR|1|2A|C|2767
5HCR|1|2A|U|2768
5HCR|1|2A|A|2769
5HCR|1|2A|A|2770
5HCR|1|2A|G|2771

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13