3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5IMR_021 not in the Motif Atlas
Geometric match to HL_4LFB_015
Geometric discrepancy: 0.3038
The information below is about HL_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

5IMR|1|A|C|689
5IMR|1|A|G|690
5IMR|1|A|G|691
5IMR|1|A|U|692
5IMR|1|A|G|693
5IMR|1|A|A|694
5IMR|1|A|A|695
5IMR|1|A|A|696
5IMR|1|A|U|697
5IMR|1|A|G|698

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain D
Large subunit ribosomal RNA; LSU rRNA
Chain K
30S ribosomal protein S7
Chain O
30S ribosomal protein S11

Coloring options:


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