3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
5IMR|1|A|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5IMR_023 not in the Motif Atlas
Geometric match to HL_5J7L_017
Geometric discrepancy: 0.3515
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

5IMR|1|A|G|786
5IMR|1|A|A|787
5IMR|1|A|U|788
5IMR|1|A|U|789
5IMR|1|A|A|790
5IMR|1|A|G|791
5IMR|1|A|A|792
5IMR|1|A|U|793
5IMR|1|A|A|794
5IMR|1|A|C|795
5IMR|1|A|C|796

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 4
Transfer RNA; tRNA
Chain 5
Transfer RNA; tRNA
Chain D
Large subunit ribosomal RNA; LSU rRNA
Chain O
30S ribosomal protein S11

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