HL_5IMR_053
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CCGGGAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_053 not in the Motif Atlas
- Geometric match to HL_4V9F_032
- Geometric discrepancy: 0.3127
- The information below is about HL_4V9F_032
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5IMR|1|D|C|486
5IMR|1|D|C|487
5IMR|1|D|G|488
5IMR|1|D|G|489
5IMR|1|D|G|491
5IMR|1|D|A|492
5IMR|1|D|G|493
5IMR|1|D|G|494
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain o
- 50S ribosomal protein L22
Coloring options: