HL_5IMR_083
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 5IMR|1|D|U|1955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_083 not in the Motif Atlas
- Homologous match to HL_7A0S_048
- Geometric discrepancy: 0.3435
- The information below is about HL_7A0S_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5IMR|1|D|G|1949
5IMR|1|D|G|1950
5IMR|1|D|U|1951
5IMR|1|D|A|1952
5IMR|1|D|A|1953
5IMR|1|D|G|1954
5IMR|1|D|U|1955
5IMR|1|D|U|1956
5IMR|1|D|C|1957
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- Elongation factor 4
- Chain g
- 50S ribosomal protein L14
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