HL_5IT8_029
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 5IT8|1|AA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IT8_029 not in the Motif Atlas
- Homologous match to HL_5J7L_029
- Geometric discrepancy: 0.0507
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5IT8|1|AA|G|1356
5IT8|1|AA|A|1357
5IT8|1|AA|U|1358
5IT8|1|AA|C|1359
5IT8|1|AA|A|1360
5IT8|1|AA|G|1361
5IT8|1|AA|A|1362
5IT8|1|AA|A|1363
5IT8|1|AA|U|1364
5IT8|1|AA|G|1365
5IT8|1|AA|C|1366
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
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