HL_5IT8_074

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5IT8|1|CA|G|386, 5IT8|1|CA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_074 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0758

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5IT8|1|CA|A|382
5IT8|1|CA|C|383
5IT8|1|CA|A|384
5IT8|1|CA|C|385
5IT8|1|CA|G|386
5IT8|1|CA|U|387
5IT8|1|CA|G|388
5IT8|1|CA|G|389
5IT8|1|CA|U|390
5IT8|1|CA|A|391
5IT8|1|CA|U|392

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CY

50S ribosomal protein L28