HL_5IT8_084
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 5IT8|1|CA|A|751, 5IT8|1|CA|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IT8_084 not in the Motif Atlas
- Homologous match to HL_5J7L_155
- Geometric discrepancy: 0.0989
- The information below is about HL_5J7L_155
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5IT8|1|CA|U|744
5IT8|1|CA|1MG|745
5IT8|1|CA|PSU|746
5IT8|1|CA|5MU|747
5IT8|1|CA|G|748
5IT8|1|CA|A|749
5IT8|1|CA|A|750
5IT8|1|CA|A|751
5IT8|1|CA|A|752
5IT8|1|CA|A|753
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C1
- 50S ribosomal protein L32
- Chain C3
- 50S ribosomal protein L34
- Chain CD
- 50S ribosomal protein L3
- Chain CT
- 50S ribosomal protein L22
Coloring options: