HL_5IT8_138

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_138 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.0503

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5IT8|1|DA|U|158
5IT8|1|DA|G|159
5IT8|1|DA|A|160
5IT8|1|DA|A|161
5IT8|1|DA|U|162
5IT8|1|DA|C|163
5IT8|1|DA|C|164
5IT8|1|DA|A|165
5IT8|1|DA|U|166
5IT8|1|DA|A|167
5IT8|1|DA|G|168

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DY

50S ribosomal protein L28