HL_5J8B_023

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

5J8B|1|A|U|793, 5J8B|1|A|A|797, 5J8B|1|A|A|798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_023 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.04

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

5J8B|1|A|G|790
5J8B|1|A|G|791
5J8B|1|A|A|792
5J8B|1|A|U|793
5J8B|1|A|G|794
5J8B|1|A|C|795
5J8B|1|A|A|796
5J8B|1|A|A|797
5J8B|1|A|A|798
5J8B|1|A|C|799

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain 7

50S ribosomal protein L34

Chain E

50S ribosomal protein L3

Chain W

50S ribosomal protein L22