HL_5J8B_046
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5J8B|1|A|A|1810, 5J8B|1|A|C|1811, 5J8B|1|A|C|1812, 5J8B|1|A|A|1816
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_046 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0382
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5J8B|1|A|U|1807
5J8B|1|A|U|1808
5J8B|1|A|U|1809
5J8B|1|A|A|1810
5J8B|1|A|C|1811
5J8B|1|A|C|1812
5J8B|1|A|A|1813
5J8B|1|A|A|1814
5J8B|1|A|A|1815
5J8B|1|A|A|1816
5J8B|1|A|A|1817
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain D
- 50S ribosomal protein L2
- Chain W
- 50S ribosomal protein L22
Coloring options: