HL_5J8B_067
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5J8B|1|A|G|2763, 5J8B|1|A|C|2767
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_067 not in the Motif Atlas
- Homologous match to HL_7RQB_066
- Geometric discrepancy: 0.0622
- The information below is about HL_7RQB_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.7
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 8
Unit IDs
5J8B|1|A|C|2757
5J8B|1|A|U|2758
5J8B|1|A|G|2759
5J8B|1|A|A|2760
5J8B|1|A|A|2761
5J8B|1|A|A|2762
5J8B|1|A|G|2763
5J8B|1|A|C|2764
5J8B|1|A|A|2765
5J8B|1|A|U|2766
5J8B|1|A|C|2767
5J8B|1|A|U|2768
5J8B|1|A|A|2769
5J8B|1|A|A|2770
5J8B|1|A|G|2771
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain H
- 50S ribosomal protein L6
- Chain N
- 50S ribosomal protein L13
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