HL_5J8B_089
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5J8B|1|a|U|777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8B_089 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.0717
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5J8B|1|a|G|770
5J8B|1|a|A|771
5J8B|1|a|U|772
5J8B|1|a|U|773
5J8B|1|a|A|774
5J8B|1|a|G|775
5J8B|1|a|A|776
5J8B|1|a|U|777
5J8B|1|a|A|778
5J8B|1|a|C|779
5J8B|1|a|C|780
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S11
- Chain v
- mRNA
- Chain x
- Transfer RNA; tRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: