HL_5JCS_015

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5JCS|1|x|A|913, 5JCS|1|x|A|914, 5JCS|1|x|A|915, 5JCS|1|x|G|916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_015 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.4741

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5JCS|1|x|G|910
5JCS|1|x|C|911
5JCS|1|x|G|912
5JCS|1|x|A|913
5JCS|1|x|A|914
5JCS|1|x|A|915
5JCS|1|x|G|916
5JCS|1|x|A|917
5JCS|1|x|C|918

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A