HL_5JCS_030
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AGUUAUCUUUU
- Length
- 11 nucleotides
- Bulged bases
- 5JCS|1|x|U|1687
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JCS_030 not in the Motif Atlas
- Geometric match to HL_6UFG_006
- Geometric discrepancy: 0.3524
- The information below is about HL_6UFG_006
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_88397.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5JCS|1|x|A|1679
5JCS|1|x|G|1680
5JCS|1|x|U|1681
5JCS|1|x|U|1682
5JCS|1|x|A|1683
5JCS|1|x|U|1684
5JCS|1|x|C|1685
5JCS|1|x|U|1686
5JCS|1|x|U|1687
5JCS|1|x|U|1688
5JCS|1|x|U|1689
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain U
- 60S ribosomal protein L22-A
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