HL_5JCS_040

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5JCS|1|x|U|2298

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_040 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.4242

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5JCS|1|x|U|2292
5JCS|1|x|C|2293
5JCS|1|x|U|2294
5JCS|1|x|A|2295
5JCS|1|x|A|2296
5JCS|1|x|U|2297
5JCS|1|x|U|2298
5JCS|1|x|A|2299
5JCS|1|x|G|2300

Current chains

Chain x

25S ribosomal RNA

Nearby chains