HL_5JCS_044
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CAUGAAAGUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JCS_044 not in the Motif Atlas
- Geometric match to HL_5TBW_015
- Geometric discrepancy: 0.3589
- The information below is about HL_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5JCS|1|x|C|2742
5JCS|1|x|A|2743
5JCS|1|x|U|2744
5JCS|1|x|G|2745
5JCS|1|x|A|2746
5JCS|1|x|A|2747
5JCS|1|x|A|2748
5JCS|1|x|G|2749
5JCS|1|x|U|2750
5JCS|1|x|G|2751
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain z
- 5S ribosomal RNA; 5S rRNA
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