3D structure

PDB id
5JCS (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CAUGAAAGUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5JCS_044 not in the Motif Atlas
Geometric match to HL_5TBW_015
Geometric discrepancy: 0.3589
The information below is about HL_5TBW_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53971.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5JCS|1|x|C|2742
5JCS|1|x|A|2743
5JCS|1|x|U|2744
5JCS|1|x|G|2745
5JCS|1|x|A|2746
5JCS|1|x|A|2747
5JCS|1|x|A|2748
5JCS|1|x|G|2749
5JCS|1|x|U|2750
5JCS|1|x|G|2751

Current chains

Chain x
25S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L5
Chain z
5S ribosomal RNA; 5S rRNA

Coloring options:


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