HL_5JUO_006

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

5JUO|1|A|U|248, 5JUO|1|A|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.3368

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5JUO|1|A|G|243
5JUO|1|A|A|244
5JUO|1|A|U|245
5JUO|1|A|G|246
5JUO|1|A|A|247
5JUO|1|A|U|248
5JUO|1|A|U|249
5JUO|1|A|C|250

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)

Chain DB

eS6 (yeast S6)

Chain IB

uS17 (yeast S11)