HL_5JUO_052
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 5JUO|1|B|U|689, 5JUO|1|B|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_052 not in the Motif Atlas
- Homologous match to HL_8C3A_015
- Geometric discrepancy: 0.2534
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5JUO|1|B|G|686
5JUO|1|B|U|687
5JUO|1|B|G|688
5JUO|1|B|U|689
5JUO|1|B|A|690
5JUO|1|B|A|691
5JUO|1|B|A|692
5JUO|1|B|A|693
5JUO|1|B|C|694
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
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