HL_5JUO_078
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 5JUO|1|B|C|1846, 5JUO|1|B|G|1848, 5JUO|1|B|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_078 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.2042
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5JUO|1|B|C|1844
5JUO|1|B|G|1845
5JUO|1|B|C|1846
5JUO|1|B|A|1847
5JUO|1|B|G|1848
5JUO|1|B|C|1849
5JUO|1|B|A|1850
5JUO|1|B|G|1851
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain H
- uL4 (yeast L4)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
- Chain U
- uL22 (yeast L17)
Coloring options: