HL_5JUP_019
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUP_019 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.3639
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5JUP|1|A|A|829
5JUP|1|A|U|830
5JUP|1|A|U|831
5JUP|1|A|U|832
5JUP|1|A|U|833
5JUP|1|A|G|834
5JUP|1|A|U|835
5JUP|1|A|U|836
5JUP|1|A|G|837
5JUP|1|A|G|838
5JUP|1|A|U|839
5JUP|1|A|U|840
5JUP|1|A|U|841
5JUP|1|A|C|842
5JUP|1|A|U|843
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain DB
- eS6 (yeast S6)
- Chain IB
- uS17 (yeast S11)
Coloring options: