HL_5JUP_121
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGUAACUAUGACU
- Length
- 13 nucleotides
- Bulged bases
- 5JUP|1|B|U|2254, 5JUP|1|B|A|2256
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUP_121 not in the Motif Atlas
- Homologous match to HL_8P9A_160
- Geometric discrepancy: 0.5852
- The information below is about HL_8P9A_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70658.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|B|A|2252
5JUP|1|B|G|2253
5JUP|1|B|U|2254
5JUP|1|B|A|2255
5JUP|1|B|A|2256
5JUP|1|B|C|2257
5JUP|1|B|U|2258
5JUP|1|B|A|2259
5JUP|1|B|U|2260
5JUP|1|B|G|2261
5JUP|1|B|A|2262
5JUP|1|B|C|2263
5JUP|1|B|U|2264
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain BC
- eS30 (yeast S30)
- Chain DC
- yeast eEF2
- Chain EC
- IRES
Coloring options: