HL_5JUS_008

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5JUS|1|A|G|337

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.2439

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5JUS|1|A|G|330
5JUS|1|A|A|331
5JUS|1|A|U|332
5JUS|1|A|A|333
5JUS|1|A|G|334
5JUS|1|A|U|335
5JUS|1|A|G|336
5JUS|1|A|G|337
5JUS|1|A|C|338

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)

Chain IB

uS17 (yeast S11)