HL_5JUS_026
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_026 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.2486
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
5JUS|1|A|A|1238
5JUS|1|A|U|1239
5JUS|1|A|U|1240
5JUS|1|A|G|1241
5JUS|1|A|A|1242
5JUS|1|A|G|1243
5JUS|1|A|A|1244
5JUS|1|A|G|1245
5JUS|1|A|C|1246
5JUS|1|A|U|1247
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain CC
- eS31 (yeast S31)
- Chain MB
- uS19 (yeast S15)
Coloring options: